Clever Accounts
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Payroll, RTI, P60s & pensions

Payroll, handled.

Monthly payroll processing, RTI submissions, payslips, P60s and pension auto-enrolment — all run by your dedicated accountant so HMRC and your team are happy.

Included in Limited Company package No setup fee Unlimited advice

What you get

Pay runs per year12 monthly
RTI submissionsReal-time, every run
PayslipsBranded, digital, FreeAgent
P60 & P11D filingsYear-end, included
Pension auto-enrolmentFully managed

Included in our Limited Company package from £104.50/month. Extra employees from £5/month each.

All Included

Every part of UK payroll — all in one fee

Payroll has a lot of moving parts. We handle every one of them so you don't have to keep on top of HMRC deadlines, pension rules, or tax-code changes.

Monthly payroll processing

Salaries, dividends timing, bonuses and deductions — calculated and posted on the same date each month so your team is paid on time, every time.

RTI submissions to HMRC

Full Payment Submission (FPS) every pay run and Employer Payment Summary (EPS) where required — filed in real time as HMRC requires.

Payslips for directors & staff

Branded, compliant digital payslips delivered to every employee. Available in FreeAgent and via email — no paper, no fuss.

P60s & P11Ds at year-end

Annual certificates of pay for every employee and benefits-in-kind reporting for directors — all prepared, filed, and distributed by us.

Pension auto-enrolment

Assessment, enrolment, ongoing contributions and re-enrolment every three years — fully managed in line with The Pensions Regulator's rules.

PAYE & NI calculations

Correct tax codes, NI categories, student loan deductions, attachment of earnings orders — handled correctly so HMRC isn't writing to you.

Director & employee changes

New starters, leavers, P45s, salary changes, address updates — all reflected in the next pay run with no admin from your side.

Unlimited payroll advice

Ring your accountant whenever you have a question. Optimal director salary, dividend timing, statutory pay, redundancy — no per-question charges.

Why It Matters

Payroll mistakes are the expensive kind

HMRC, The Pensions Regulator, and your own employees all see payroll errors immediately. Getting it right matters — and getting it optimised saves real money.

RTI penalties stack up fast

HMRC fines start at £100 per month for late Full Payment Submissions and escalate by employer size. One missed deadline can cost more than a year of accountancy fees.

Auto-enrolment isn't optional

If you employ anyone — including a sole director — you're a pension scheme employer. The Pensions Regulator can fine non-compliance up to £10,000 a day for serious breaches.

Director salary affects your tax bill

The right director salary balances NI threshold, Corporation Tax relief, and state pension qualifying years. Getting it wrong typically costs £500–£2,000 a year in unnecessary tax.

Mistakes are visible to employees

Wrong tax code, missed pension contribution, late payslip — employees notice instantly. Payroll errors damage trust faster than almost any other admin mistake.

How It Works

Set up once. Run forever.

From your first pay run to year-end P60s, here's how payroll works at Clever Accounts.

Day 1
PAYE scheme set up
If you don't already have a PAYE scheme registered with HMRC, we register one for you. If you do, we get authorised on your behalf via the agent portal.
Day 2–7
Employees onboarded
We add directors and staff to the payroll, set tax codes from P45s or starter checklists, configure pension scheme details, and confirm pay dates.
Monthly
Pay run + RTI
Same date each month: payslips generated, Full Payment Submission filed to HMRC in real time, pension contributions calculated and deducted.
April
Tax year-end
Final FPS, P60s issued to every employee, P11D benefits reporting for directors, new tax codes applied automatically for the new year.
Ongoing
Changes handled
New starters, leavers, salary changes, statutory pay (sick, maternity, paternity), redundancy — all processed without you chasing forms.

Common Questions

Payroll FAQs

Quick answers to the questions our payroll clients ask most.

Payroll Sorted

Stop wrestling with RTI deadlines and tax codes

Payroll is included in our Limited Company package from £104.50/month — including your dedicated accountant, FreeAgent, and unlimited advice. No setup fee, no minimum contract.